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Intron Name: Anas_platyrhynchos_platyrhynchos_8_14684047_14684181_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

14684047 - 14684181

Intron Length:

135

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTTTGGTTT

5'SS Class:

weak_major

3'SS Sequence:

GCTTCTTCTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

GCTTCTTCTACA

Flanking Amino Acid:

SQKRSFLTVLVPPSIKDHSG

Intron Amino Acid Position:

3056

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.6

0.34

1.2

39.8

Major BPS

61.3

0.28

30.6

Major PPT

82.4

0.73

0.8

76.1

32.6

Minor 5ss

45.3

-0.5

3.1

62.3

43.6

Minor BPS

51.5

0.04

1.9

64.14

42.1

Associated Gene:

Gene:

HMCN1

Ensembl Gene ID:

ENSAPLG00000011251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047505

14638056 - 14826313

188258

ENSAPLT00000033587

14638056 - 14826398

188343

ENSAPLT00000011880

14638056 - 14826398

188343