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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14684296_14685370_R

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14684296 - 14685370
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTCTTTTTACTT
Flanking Amino Acid:
SLNANTFIVPGARTLQIPRA
Intron Amino Acid Position:
3018

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
76.5
33.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.6
0.85
0.7
85.8
27.1
Minor 5ss
28.6
-2.5
3.2
36.4
42
Minor BPS
56.3
0.28
1.6
69.97
42.5

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258