About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14685533_14688522_R

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14685533 - 14688522
Intron Length:
2990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATACTATTGATG
Flanking Amino Acid:
AKKYFNLNVHVPPNVVGTNP
Intron Amino Acid Position:
2964

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
89.7
0.89
0.6
85.1
22.4
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
47.4
-0.3
1.6
51.64
36.4

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343