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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14692940_14693677_R

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14692940 - 14693677
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAAACATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCCTTCTCAAAC
Flanking Amino Acid:
DEVEFDVNIQVPPSFQKPYR
Intron Amino Acid Position:
2763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
64.5
0.33
0.9
59.3
34.9
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
55.1
0.14
1.7
63.16
42.4

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343