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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14693829_14695786_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14693829 - 14695786
Intron Length:
1958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
AAATACATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATTAACA
Flanking Amino Acid:
ASISWYKDGQPLKPDDHVVI
Intron Amino Acid Position:
2713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
75.8
34.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
65
0.34
1
55.7
43.3
Minor 5ss
28.4
-2.5
3
34.8
41.6
Minor BPS
67.1
0.53
1.8
79.48
35.6

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258