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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14697392_14698607_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14697392 - 14698607
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATAATTTAGACC
Flanking Amino Acid:
ESNRNIRILPGGRTLQILSA
Intron Amino Acid Position:
2626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
81.7
0.71
0.9
79.6
32.3
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
47.2
-0.2
1.6
56.34
36.2

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258