Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14699715_14700121_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

14699715 - 14700121

Intron Length:

407

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAAAATA

5'SS Class:

strong_major

3'SS Sequence:

TAACTCCATTAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTAAC

U12 Branch Point Sequence:

ATTCTCTTAACT

Flanking Amino Acid:

HSVTLTCEVIGNPVPQITWV

Intron Amino Acid Position:

2504

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

83.2

28.3

Major BPS

77.1

0.67

77.9

32.2

Major PPT

0.2

1.1

61.8

38.8

Minor 5ss

36.4

-1.5

3.1

48.8

46.9

Minor BPS

82.2

1.09

91.82

Associated Gene:

Gene:

HMCN1

Ensembl Gene ID:

ENSAPLG00000011251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033587

14638056 - 14826398

188343

ENSAPLT00000011880

14638056 - 14826398

188343

ENSAPLT00000047505

14638056 - 14826313

188258