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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14700209_14703741_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14700209 - 14703741
Intron Length:
3533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TATTTGATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CTTTATTTGATT
Flanking Amino Acid:
ARKDFDLSVLVPPGIVGENK
Intron Amino Acid Position:
2475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
79.8
0.67
0.9
70.6
44.1
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
64.3
0.53
1.5
79.36
37.3

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258