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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14703856_14707078_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14703856 - 14707078
Intron Length:
3223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAC
5'SS Class:
major
3'SS Sequence:
TTTTCATTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTTCATT
Flanking Amino Acid:
TLNSSVRILSGGRTLRLTHT
Intron Amino Acid Position:
2437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
57.5
41.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86.7
0.83
0.7
85.2
28.1
Minor 5ss
29.3
-2.4
3.5
41
45.6
Minor BPS
62.8
0.48
1.7
81.14
35.2

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258