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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14707247_14708384_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14707247 - 14708384
Intron Length:
1138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTCTTATTC
Flanking Amino Acid:
SDRKYDLNVHVPPSIAGDLQ
Intron Amino Acid Position:
2381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.9
0.72
0.7
77.5
30.9
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
65.1
0.45
1.5
75.25
35.4

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258