About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14708667_14709368_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14708667 - 14709368
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TGACTTGTAAAT
Flanking Amino Acid:
AKKEYSLQVYIRPTIFNSGS
Intron Amino Acid Position:
2287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
46
-0.2
2
63.86
40.2

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343