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Intron Name: Anas_platyrhynchos_platyrhynchos_8_14709531_14711349_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14709531 - 14711349

Intron Length:

1819

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

ATGTCTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTATCTGAAAG

Flanking Amino Acid:

PPPSLTWKKSGSPIVADHSG

Intron Amino Acid Position:

2233

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.8

79.3

28.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.1

0.68

0.9

73.9

36.1

Minor 5ss

30.7

-2.2

2.6

33.5

35.6

Minor BPS

57.4

0.09

1.7

66.36

40.8

Associated Gene:

Gene:

HMCN1

Ensembl Gene ID:

ENSAPLG00000011251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033587

14638056 - 14826398

188343

ENSAPLT00000011880

14638056 - 14826398

188343

ENSAPLT00000047505

14638056 - 14826313

188258