Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14715373_14719412_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14715373 - 14719412

Intron Length:

4040

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGATTT

5'SS Class:

strong_major

3'SS Sequence:

TTTATTGCTATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTGTTTTGATT

Flanking Amino Acid:

SQRDIDLRVYVPPNIMGEEQ

Intron Amino Acid Position:

2101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

79.4

29.5

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

78.4

0.64

0.9

73.3

37.2

Minor 5ss

38.6

-1.3

3.3

53.2

Minor BPS

66.4

0.6

1.3

81.5

34.7

Associated Gene:

Gene:

HMCN1

Ensembl Gene ID:

ENSAPLG00000011251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033587

14638056 - 14826398

188343

ENSAPLT00000011880

14638056 - 14826398

188343

ENSAPLT00000047505

14638056 - 14826313

188258