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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14719537_14720310_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14719537 - 14720310
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGGT
5'SS Class:
major
3'SS Sequence:
GCTTCTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GTATACTGAATG
Flanking Amino Acid:
PVSSFSDGLQVLSGGRVLAL
Intron Amino Acid Position:
2060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
60.8
43.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
79.9
0.67
0.9
73.6
35.6
Minor 5ss
29.9
-2.3
3.8
47.5
47.9
Minor BPS
53.7
-0
1.7
59.5
41.8

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343