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Intron Name: Anas_platyrhynchos_platyrhynchos_8_14720463_14723205_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14720463 - 14723205

Intron Length:

2743

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTTAT

U12 Branch Point Sequence:

AGCTCCAGATTT

Flanking Amino Acid:

AELFYNLQVHVPPSISGSND

Intron Amino Acid Position:

2009

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

86.2

29.2

Major BPS

70.9

0.52

1.2

63.7

43.9

Major PPT

94.6

0.6

88.2

29.1

Minor 5ss

38.5

-1.3

2.8

49.8

40.3

Minor BPS

44.9

-0.3

1.9

61.16

42.5

Associated Gene:

Gene:

HMCN1

Ensembl Gene ID:

ENSAPLG00000011251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047505

14638056 - 14826313

188258

ENSAPLT00000033587

14638056 - 14826398

188343

ENSAPLT00000011880

14638056 - 14826398

188343