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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14724874_14726229_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14724874 - 14726229
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATGATG
5'SS Class:
major
3'SS Sequence:
TGTTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GAAAACCTAATA
Flanking Amino Acid:
AQQHVRLHVHEPPSLEDAGK
Intron Amino Acid Position:
1916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
66.6
44.3
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
87.1
0.84
0.8
80.5
37
Minor 5ss
36.4
-1.5
3.3
49.6
46.4
Minor BPS
46
-0.3
1.8
53.56
37.7

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258