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Intron Name: Anas_platyrhynchos_platyrhynchos_8_14726348_14727576_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

14726348 - 14727576

Intron Length:

1229

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

GGTACAGCTGGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGTAAA

U12 Branch Point Sequence:

TTCCCTTGTATC

Flanking Amino Acid:

PVNTARGNTRSSGRILQVVK

Intron Amino Acid Position:

1877

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

78.2

36.3

Major BPS

57.5

0.19

1.4

61.7

43.1

Major PPT

45.6

-0.2

1.7

43.7

42.4

Minor 5ss

39.6

-1.2

2.8

49.5

40.3

Minor BPS

47.9

-0.1

1.7

60.38

39.1

Associated Gene:

Gene:

HMCN1

Ensembl Gene ID:

ENSAPLG00000011251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047505

14638056 - 14826313

188258

ENSAPLT00000011880

14638056 - 14826398

188343