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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14727732_14727970_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14727732 - 14727970
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GATATTTTATTT
Flanking Amino Acid:
REKEFDVTVHVPPTIKSSGT
Intron Amino Acid Position:
1825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
76.7
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.3
0.66
0.9
73.2
37.2
Minor 5ss
40.6
-1
3.2
54.1
45.6
Minor BPS
50.8
0.1
1.6
65.95
39.1

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258