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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14728141_14728731_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14728141 - 14728731
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GAGTTTATACTT
Flanking Amino Acid:
SATGTPSPTIMWLKDGQPVE
Intron Amino Acid Position:
1768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
81
0.7
0.9
80.5
31.5
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
44.9
-0.3
1.8
57.78
39.7

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343