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Intron Name: Anas_platyrhynchos_platyrhynchos_8_14728841_14729935_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14728841 - 14729935

Intron Length:

1095

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGTGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAA

U12 Branch Point Sequence:

TGCTGATGAATG

Flanking Amino Acid:

KEIKYEVEILVPPFVEGGGE

Intron Amino Acid Position:

1732

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

70.1

35.9

Major BPS

74.4

0.61

0.9

63.9

34.9

Major PPT

86.1

0.81

0.7

81.1

Minor 5ss

32.7

-2

3.1

39.1

46.7

Minor BPS

43.9

-0.6

2.1

50.06

Associated Gene:

Gene:

HMCN1

Ensembl Gene ID:

ENSAPLG00000011251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033587

14638056 - 14826398

188343

ENSAPLT00000011880

14638056 - 14826398

188343

ENSAPLT00000047505

14638056 - 14826313

188258