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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14730218_14730835_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14730218 - 14730835
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTTTTCTACA
Flanking Amino Acid:
AEKIYEVDVYVPPVIEGDAE
Intron Amino Acid Position:
1638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
72.7
38.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
91.8
0.94
0.6
87.6
22.9
Minor 5ss
32.5
-2
3.2
40.9
45.3
Minor BPS
50.1
-0
1.8
66.5
40.1

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343