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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14731115_14735823_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14731115 - 14735823
Intron Length:
4709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTCTTCTGAAAT
Flanking Amino Acid:
QVKEIKLIIHVPPSIKGGNS
Intron Amino Acid Position:
1545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
65.5
0.35
1
62.6
37.6
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
60.3
0.4
1.6
74.71
41.6

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343