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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14736984_14737521_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14736984 - 14737521
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTTACTGTAACA
Flanking Amino Acid:
SEKLFNLDILVPPSIIGADT
Intron Amino Acid Position:
1451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
86.4
29.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.2
0.61
1
78.1
34.2
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
56.6
0.2
2.1
71.49
41.1

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343