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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14743471_14745860_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14743471 - 14745860
Intron Length:
2390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAACG
5'SS Class:
major
3'SS Sequence:
CTTATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGCTTCTTATTT
Flanking Amino Acid:
EMQLISPFSPRHTYLPSGSM
Intron Amino Acid Position:
1127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
69
41.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88
0.85
0.8
80.4
37
Minor 5ss
39.3
-1.2
2.8
50.2
45.8
Minor BPS
63
0.49
1.6
75.8
41.6

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258