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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14746036_14747777_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14746036 - 14747777
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATATATG
5'SS Class:
major
3'SS Sequence:
TTCCATATTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATCTACTTAACA
Flanking Amino Acid:
ATRKVQLTVYVKPRVSRPGD
Intron Amino Acid Position:
1069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
69.5
40.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
75.2
0.57
0.9
69.4
35.2
Minor 5ss
44.9
-0.5
2.7
56
43.7
Minor BPS
74.1
0.75
1.4
78.96
37.1

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000040014
14734169 - 14831203
97035
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343