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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14750734_14752952_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
14750734 - 14752952
Intron Length:
2219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGTAAGA
5'SS Class:
weak_major
3'SS Sequence:
ATTCTTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
TTTTCTTTAGCA
Flanking Amino Acid:
PDRRWIRNSMLVPNPYINVR
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.1
53.3
39.4
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
79.6
0.67
1
77
36.5
Minor 5ss
26.2
-2.7
3
28.4
38
Minor BPS
78.1
0.88
1.4
87.27
31

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000040014
14734169 - 14831203
97035
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343