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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14753078_14755600_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14753078 - 14755600
Intron Length:
2523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
QFRTGALSINITPLIGISPD
Intron Amino Acid Position:
828

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.5
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.2
0.66
1
79.5
32.8
Minor 5ss
37
-1.5
2.7
44
38.5
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040014
14734169 - 14831203
97035