About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14754666_14755600_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14754666 - 14755600
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TCTTCCCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCGTTTTTATTT
Flanking Amino Acid:
QFRTGALSINNLWVSDEGTY
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.5
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.6
0.64
0.7
70.6
30.5
Minor 5ss
37
-1.5
2.7
44
38.5
Minor BPS
57.4
0.31
1.6
70.24
42.1

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343