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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14756674_14757457_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14756674 - 14757457
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCACTTC
5'SS Class:
major
3'SS Sequence:
TGTCTGAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTTACT
Flanking Amino Acid:
IPHPQVKWFKGDLELRPSAF
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
62.7
38.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
61.9
0.27
1
59.6
40.8
Minor 5ss
41.2
-1
3.3
58.4
46.5
Minor BPS
74
0.84
1.5
91.27
31.8

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000040014
14734169 - 14831203
97035
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343