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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14759644_14767153_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14759644 - 14767153
Intron Length:
7510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAGA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATCTTCTTAATT
Flanking Amino Acid:
TTASVFLTVQEPPRVVISPK
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.7
40.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.3
0.68
0.8
77.9
29.4
Minor 5ss
38.4
-1.3
2.9
49.8
46
Minor BPS
78.8
0.98
1.1
85.57
35

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000040014
14734169 - 14831203
97035
ENSAPLT00000033587
14638056 - 14826398
188343