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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14767430_14770848_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14767430 - 14770848
Intron Length:
3419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCCTTATTT
Flanking Amino Acid:
GRAQTFLDVSEPPPIIQVPN
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.5
33.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.6
0.69
0.8
76.4
31.2
Minor 5ss
31.5
-2.1
3
42.7
44.3
Minor BPS
74.7
0.85
1.5
87.57
38.6

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258