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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14770971_14774201_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14770971 - 14774201
Intron Length:
3231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTATTGAAAC
Flanking Amino Acid:
GVKLGEDQFFKESSSMSWEI
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
86.4
0.82
0.7
84.7
30
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
54
0.11
1.7
68.34
36.3

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258
ENSAPLT00000040014
14734169 - 14831203
97035