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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14775590_14779436_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
14775590 - 14779436
Intron Length:
3847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTTACTGTA
5'SS Class:
weak_major
3'SS Sequence:
TTCAGACATCGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TGATCTTCAACT
Flanking Amino Acid:
PEPGTWTIKVYSGRHSVRIT
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.5
0.08
1.3
60
39
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
47.5
-0.1
1.7
47.8
44.2
Minor 5ss
40
-1.1
3.1
52.2
39.9
Minor BPS
69.5
0.69
1.5
82.23
38.8

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040014
14734169 - 14831203
97035