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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14775598_14779441_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14775598 - 14779441
Intron Length:
3844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTTA
5'SS Class:
major
3'SS Sequence:
CTTGCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TGATCTTCAACT
Flanking Amino Acid:
DPEPGTWTIKTSSSGRHSVR
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.8
35.5
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
86.5
0.82
0.8
84.1
30.8
Minor 5ss
45.8
-0.4
3.2
63.9
47.7
Minor BPS
69.5
0.69
1.5
82.23
38.8

Associated Gene:

Gene:
HMCN1
Ensembl Gene ID:
ENSAPLG00000011251
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033587
14638056 - 14826398
188343
ENSAPLT00000011880
14638056 - 14826398
188343
ENSAPLT00000047505
14638056 - 14826313
188258