Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14781452_14792564_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14781452 - 14792564

Intron Length:

11113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATTTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTTCATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTCAA

U12 Branch Point Sequence:

CTTTCTTTCATA

Flanking Amino Acid:

FHLDKKQVNEVLKWVEEAVQ

Intron Amino Acid Position:

207

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

81.2

33.8

Major BPS

69.4

0.48

71.6

33.8

Major PPT

83.3

0.75

0.7

79.7

25.9

Minor 5ss

43.2

-0.7

2.9

57.8

46.8

Minor BPS

64.3

0.44

1.7

74.34

38.4

Associated Gene:

Gene:

HMCN1

Ensembl Gene ID:

ENSAPLG00000011251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047505

14638056 - 14826313

188258

ENSAPLT00000040014

14734169 - 14831203

97035

ENSAPLT00000033587

14638056 - 14826398

188343

ENSAPLT00000011880

14638056 - 14826398

188343