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Intron Name: Anas_platyrhynchos_platyrhynchos_8_14792688_14793025_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14792688 - 14793025

Intron Length:

338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGAAG

5'SS Class:

major

3'SS Sequence:

TTTTTTAATACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

LQLIQQKQSQVVFVLTGDCD

Intron Amino Acid Position:

166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

63.1

42.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.81

0.8

81.8

33.6

Minor 5ss

29.9

-2.3

3.3

38.8

46.5

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

HMCN1

Ensembl Gene ID:

ENSAPLG00000011251

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033587

14638056 - 14826398

188343

ENSAPLT00000011880

14638056 - 14826398

188343

ENSAPLT00000047505

14638056 - 14826313

188258

ENSAPLT00000040014

14734169 - 14831203

97035