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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1488318_1499528_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1488318 - 1499528
Intron Length:
11211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTCTTCTACA
Flanking Amino Acid:
LNKRRAAAQHGKRSGKQSQQ
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
54
45.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
92.7
0.96
0.6
88.1
21.9
Minor 5ss
29.9
-2.3
3.2
29.1
43.5
Minor BPS
63.5
0.42
1.9
79.64
36.2

Associated Gene:

Gene:
ABCD3
Ensembl Gene ID:
ENSAPLG00000009113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021119
1488199 - 1514667
26469