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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14943077_14943364_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14943077 - 14943364
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TCCTGACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
TTCTCCTGACTT
Flanking Amino Acid:
WKIIASEKTSSNTYLCLAVL
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
76.3
0.59
0.9
68.7
36.3
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
62.5
0.47
1.8
80.5
41.8

Associated Gene:

Gene:
IVNS1ABP
Ensembl Gene ID:
ENSAPLG00000008747
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009125
14935484 - 14945410
9927