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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14943590_14943689_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14943590 - 14943689
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TACCATTTAAAC
Flanking Amino Acid:
AELNGKLIAAGGYNREECLR
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
76
0.58
0.9
73.7
35.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
50.8
0
1.6
59.45
39

Associated Gene:

Gene:
IVNS1ABP
Ensembl Gene ID:
ENSAPLG00000008747
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009125
14935484 - 14945410
9927