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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14949007_14953469_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14949007 - 14953469
Intron Length:
4463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
TTTTTGTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATGTCCTGATAA
Flanking Amino Acid:
LYECVSQELYRERLEVGCCQ
Intron Amino Acid Position:
847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
65.4
42.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
84.7
0.78
0.8
77.9
36.6
Minor 5ss
37.7
-1.4
3.1
48.3
47.3
Minor BPS
50.6
0.01
1.8
64.29
41.6

Associated Gene:

Gene:
SWT1
Ensembl Gene ID:
ENSAPLG00000008607
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008973
14948901 - 14986154
37254