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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14954608_14963112_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14954608 - 14963112
Intron Length:
8505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTACACTTAAAA
Flanking Amino Acid:
AVNDILEGIRRILTPTSSFQ
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
62.7
0.39
1.6
72.86
37.8

Associated Gene:

Gene:
SWT1
Ensembl Gene ID:
ENSAPLG00000008607
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008973
14948901 - 14986154
37254