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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14965147_14966650_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
14965147 - 14966650
Intron Length:
1504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
AAACTTTTATAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GTTTGCTAAACT
Flanking Amino Acid:
VSKLYQTFTEVRSDSEQDLS
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
57.5
0.17
1.2
61.9
42.5
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
63
0.49
2.1
84.57
42.1

Associated Gene:

Gene:
SWT1
Ensembl Gene ID:
ENSAPLG00000008607
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008973
14948901 - 14986154
37254