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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14967864_14968453_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14967864 - 14968453
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTTCA
5'SS Class:
major
3'SS Sequence:
TATTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGATTTTTAAAT
Flanking Amino Acid:
KIAFGNLWMEILYLKPPWTL
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
70.5
36.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.4
0.91
0.7
88.7
27.9
Minor 5ss
39.2
-1.2
3
50.7
45.7
Minor BPS
61.9
0.45
1.4
71.43
39

Associated Gene:

Gene:
SWT1
Ensembl Gene ID:
ENSAPLG00000008607
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008973
14948901 - 14986154
37254