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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14969561_14970799_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14969561 - 14970799
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTTCC
5'SS Class:
major
3'SS Sequence:
AATTCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATGTCAGAAAT
Flanking Amino Acid:
LFPQAVVILCTDDKNLCNKA
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.3
71.9
34.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.8
0.58
0.9
67.1
39.5
Minor 5ss
37.4
-1.4
2.8
44.3
36.5
Minor BPS
46.9
-0.1
1.9
68.27
41.9

Associated Gene:

Gene:
SWT1
Ensembl Gene ID:
ENSAPLG00000008607
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008973
14948901 - 14986154
37254