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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14970894_14971446_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14970894 - 14971446
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGATGT
5'SS Class:
major
3'SS Sequence:
ACTAACATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
TCTGTCTTAACT
Flanking Amino Acid:
QSMQLASQKTYGLSDENNDD
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.5
36.6
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
67.9
0.4
1
58.7
40.9
Minor 5ss
42.1
-0.9
3.2
61
43.6
Minor BPS
77.4
0.94
1.3
86.99
39.2

Associated Gene:

Gene:
SWT1
Ensembl Gene ID:
ENSAPLG00000008607
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008973
14948901 - 14986154
37254