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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14974033_14974157_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14974033 - 14974157
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GTTTTTGTAACT
Flanking Amino Acid:
VRENIKSIQKSFEVFPPPQG
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
79.8
0.67
0.8
73
31.3
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
63.2
0.49
2
83.79
37.4

Associated Gene:

Gene:
SWT1
Ensembl Gene ID:
ENSAPLG00000008607
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008973
14948901 - 14986154
37254