About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14974224_14975766_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14974224 - 14975766
Intron Length:
1543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAGA
5'SS Class:
major
3'SS Sequence:
TATTTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACTAT
U12 Branch Point Sequence:
ACTTCTGTTACT
Flanking Amino Acid:
FEAPAVCFKQNFEVPCTSDS
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.7
40.1
Major BPS
62.1
0.3
1.4
61.1
45
Major PPT
81.3
0.7
0.9
73.8
41.4
Minor 5ss
38.4
-1.3
2.9
49.8
46
Minor BPS
49.7
0.06
2.3
73.68
43.4

Associated Gene:

Gene:
SWT1
Ensembl Gene ID:
ENSAPLG00000008607
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008973
14948901 - 14986154
37254