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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14976506_14977814_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14976506 - 14977814
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
AACATTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTAACAT
U12 Branch Point Sequence:
TTTTTGGTAACA
Flanking Amino Acid:
CTMRGETEFHRFKTEKDGQG
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
53.2
0.08
1.3
63.4
42.8
Major PPT
68.9
0.43
0.9
62.7
38.6
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
52.6
0.08
2.6
78.35
38.8

Associated Gene:

Gene:
SWT1
Ensembl Gene ID:
ENSAPLG00000008607
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008973
14948901 - 14986154
37254