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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14977874_14986079_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14977874 - 14986079
Intron Length:
8206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGAACA
5'SS Class:
major
3'SS Sequence:
TCCCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTATAAACC
Flanking Amino Acid:
EDTLDDQDDKNSEDTRSYNC
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
68.1
37
Major BPS
78.6
0.71
1
78.6
31
Major PPT
85.8
0.81
0.7
83.8
24.3
Minor 5ss
34.1
-1.8
3.2
41.3
39.1
Minor BPS
56.2
0.17
1.9
70.68
40.9

Associated Gene:

Gene:
SWT1
Ensembl Gene ID:
ENSAPLG00000008607
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008973
14948901 - 14986154
37254