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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14987351_14990803_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
14987351 - 14990803
Intron Length:
3453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGTAGGCG
5'SS Class:
weak_major
3'SS Sequence:
TTGATTTTTAGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTATGTTTAACT
Flanking Amino Acid:
PARGPAALWEKHISIQRQLA
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1
46.2
35.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
63.2
0.3
1.7
72.3
42.5
Minor 5ss
31.2
-2.1
3.5
37.5
41.9
Minor BPS
67.2
0.62
1.8
81.48
40.1

Associated Gene:

Gene:
TRMT1L
Ensembl Gene ID:
ENSAPLG00000008394
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008739
14987198 - 15011375
24178